The preprint of this research project is here https://www.biorxiv.org/content/10.1101/2025.09.20.677523v3
The web app for prediction of next steps in KpAMR evolution is here https://stochasticbiology.shinyapps.io/amr-predict/
A perspective piece on the broader application of Evolutionary Accumulation Modelling (EvAM) in AMR is here https://journals.asm.org/doi/10.1128/mbio.00488-25
We have several Github repos with the code (and example data) for such analyses. A bit of a one-stop shop is here https://github.com/StochasticBiology/hyperinf . The links in the README will take you to several different algorithms. Another repo, associated with the paper in the previous paragraph and with some AMR-focussed examples, is https://github.com/StochasticBiology/EvAM-MDR.
Some links to our research (and an intro video) can be found here https://stochasticbiology.w.uib.no/research/
This project is part of HyperEvol https://camria.w.uib.no/hyperevol/, in turn part of CAMRIA https://camria.w.uib.no/
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